Welcome to PGIDB

PGIDB is a user-friendly platform designed to collect globally available genome sequencing data to construct a high-quality pig reference panel. In the current version, a total of 22,993 samples (6,908 sequencing data and 16,085 chip data) were integrated, covering a total of 63 breeds (9 outgroups), and 3 types of reference panels (30×, 10×, chip) were constructed. Click AGIDB to jump to the all-in-one Imputation Platform covering 35 animals and 89 species in total.

Service provided

► Discover the diversity of pig breeds in our Library.

► Probe for breed-specific variants and allele frequency distributions with our "Search" module.

► Explore potentially deleterious variants across breeds in our "Search" module.

► Dive deep into breed-specific haplotype blocks in our Haplotype section.

► Uncover genetic potential through our Imputation scenarios.

► Download breed-specific VCF files from our resources.

Publication

Kaili Zhang, Jiete Liang, Yuhua Fu, Jinyu Chu, Liangliang Fu, Yongfei Wang, Wangjiao Li, You Zhou, Jinhua Li, Xiaoxiao Yin, Haiyan Wang, Xiaolei Liu, Chunyan Mou, Chonglong Wang, Heng Wang, Xinxing Dong, Dawei Yan, Mei Yu, Shuhong Zhao, Xinyun Li, Yunlong Ma, AGIDB: a versatile database for genotype imputation and variant decoding across species, Nucleic Acids Research, Volume 52, Issue D1, 5 January 2024, Pages D835–D849, https://doi.org/10.1093/nar/gkad913