Li J, Li W, Peng X, Li X, Zhao S, Wang H, Ma Y. Genetic basis of phenotypic convergence in pig terminal sires using pathway-based selection signature detection methods. Anim Genet. 2024 Jun 3.
Song H, Chu J, Li W, Li X, Fang L, Han J, Zhao S, Ma Y. A Novel Approach Utilizing Domain Adversarial Neural Networks for the Detection and Classification of Selective Sweeps. Adv Sci (Weinh). 2024 Apr;11(14):e2304842.
Zhang K, Liang J, Fu Y, Chu J, Fu L, Wang Y, Li W, Zhou Y, Li J, Yin X, Wang H, Liu X, Mou C, Wang C, Wang H, Dong X, Yan D, Yu M, Zhao S, Li X, Ma Y. AGIDB: a versatile database for genotype imputation and variant decoding across species. Nucleic Acids Res. 2024 Jan 5;52(D1):D835-D849.
Chu J, Ma Y, Song H, Zhao Q, Wei X, Yan Y, Fan S, Zhou B, Li S, Mou C. The genomic characteristics affect phenotypic diversity from the perspective of genetic improvement of economic traits. iScience. 2023 Mar 17;26(4):106426.
Zhan H, Xiong Y, Wang Z, Dong W, Zhou Q, Xie S, Li X, Zhao S, Ma Y. Integrative analysis of transcriptomic and metabolomic profiles reveal the complex molecular regulatory network of meat quality in Enshi black pigs. Meat Sci. 2022 Jan;183:108642.
ZHANG, K. L., Peng X., ZHANG, S. X., ZHAN, H. W., LU, J. H., XIE, S. S., ZHAO, S. H., LI, X. Y., & MA, Y. (2022). A comprehensive evaluation of factors affecting the accuracy of pig genotype imputation using a single or multi-breed reference population. Journal of Integrative Agriculture, 21(2), 486-495.
Shen Y, Wang H, Xie J, Wang Z, Ma Y. Trait-specific Selection Signature Detection Reveals Novel Loci of Meat Quality in Large White Pigs. Front Genet. 2021 Nov 16;12:761252.
Zhang S, Zhang K, Peng X, Zhan H, Lu J, Xie S, Zhao S, Li X, Ma Y. Selective sweep analysis reveals extensive parallel selection traits between large white and Duroc pigs. Evol Appl. 2020 Aug 28;13(10):2807-2820.
Zhan H, Zhang S, Zhang K, Peng X, Xie S, Li X, Zhao S, Ma Y. Genome-Wide Patterns of Homozygosity and Relevant Characterizations on the Population Structure in Piétrain Pigs. Genes (Basel). 2020 May 21;11(5):577.
Ma H, Zhang S, Zhang K, Zhan H, Peng X, Xie S, Li X, Zhao S, Ma Y. Identifying Selection Signatures for Backfat Thickness in Yorkshire Pigs Highlights New Regions Affecting Fat Metabolism. Genes (Basel). 2019 Mar 28;10(4):254.
Ma Y, Zhang S, Zhang K, Fang C, Xie S, Du X, Li X, Ni D, Zhao S. Genomic Analysis To Identify Signatures of Artificial Selection and Loci Associated with Important Economic Traits in Duroc Pigs. G3 (Bethesda). 2018 Nov 6;8(11):3617-3625.
Ma Y, Gu L, Yang L, Sun C, Xie S, Fang C, Gong Y, Li S. Identifying artificial selection signals in the chicken genome. PLoS One. 2018 Apr 26;13(4):e0196215.
Adetula AA, Liu X, Tran Thi TN, Bhuiyan AA, Du X, Zhu M, Li X, Zhao S, Ma Y, Wang H. Transcriptional Profiling of Leucocyte Count Variation from Porcine Peripheral Blood Reveals Differential Gene Expression. Biomed Res Int. 2018 Nov 18;2018:1496536.
Ma Y, Ding X, Qanbari S, Weigend S, Zhang Q, Simianer H. Properties of different selection signature statistics and a new strategy for combining them. Heredity (Edinb). 2015 Nov;115(5):426-36.
Ma Y, Wei J, Zhang Q, Chen L, Wang J, Liu J, Ding X. A genome scan for selection signatures in pigs. PLoS One. 2015 Mar 10;10(3):e0116850.
Ma Y, Zhang H, Zhang Q, Ding X. Identification of selection footprints on the X chromosome in pig. PLoS One. 2014 Apr 16;9(4):e94911.